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Workorder and Jobcard

Hi
Workorder and transfer material wrt Jobcard
My situation is
I have created a WorkOrder for Part A for 50 nos
Part A has 2 Operations
Setup 1
Setup 2
I transfer material against Job Card
I enter the details In the job card
I complete setup 1 Jobcard and submit
In setup2 rejected qty is 5 nos
How do i account for them
There is no provision for rejected qty in quality inspection
How do i handle this situation
Note : this is for inhouse manufacturing
Thanks and regards
Hemanth