Physician doctype missing when upgrading v10 to v11

We have a custom doctype which we have a link to Physician. Now it’s giving us error and upon inspection it seems that the Physician doctype is missing in v11. Did we miss something or do we need to manually add the Physician doctype to our custom app. Thank you.

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According to v11 patch Physician was renamed to Practitioner. You can see rename mapping HERE.
Hopefully someone can elaborate more on how best to proceed with migration.

UPDATE

Also see How to apply a patch in custom app?.

@jamsheer, @AdityaHase